Bioinformatics Documentation
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melbournebioinformatics/MelBioInf_docs
Bioinformatics Documentation
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Tools and skill development
Tools and skill development
What is Bioinformatics?
Introduction to the Galaxy Platform
Introduction to Galaxy Workflows
Introduction to Python
Introduction to Git and Github
Introduction to Unix
Introduction to R for Biologists
Introduction to Genome Browsers
Introduction to CWL
RNA-seq Experimental Design
Containerized Bioinformatics
Command-line software development
Workflow Translation With Janis
Genomics
Genomics
Variant detection
Variant detection
Introduction to Variant detection
Variant Calling part 1 (Galaxy)
Variant Calling part 2 (Galaxy)
Long-read Structural Variant Calling
Variant calling using command-line tools
de novo assembly
de novo assembly
Introduction to de novo assembly with Velvet
Introduction to de novo genome assembly for Illumina reads
de novo assembly of Illumina reads using Velvet (Galaxy)
de novo assembly of Illumina reads using Spades (Galaxy)
de novo assembly of PacBio reads (unix)
Hybrid genome assembly - Nanopore and Illumina
Metabarcoding
Metabarcoding
Intro to Metabarcoding using QIIME2: *Marine dataset*
Intro to Metabarcoding using QIIME2: *Mammal dataset*
Transcriptomics
Transcriptomics
RNAseq Experimental Design
Bulk RNAseq
Bulk RNAseq
Introduction to bulk RNAseq analysis
RNAseq analysis using HISAT2 (Galaxy)
RNAseq analysis using Tuxedo (Galaxy)
RNAseq differential expression tool comparision (Galaxy)
RNAseq differential expression in R
Singlecell RNAseq
Singlecell RNAseq
10X single-cell RNA-seq analysis in R
Proteomics
Proteomics
Identifying proteins from mass spectrometry data
Statistics and Visualisation
Statistics and Visualisation
Data visualisation with Python
Structural Modelling
Structural Modelling
Molecular Dynamics - Introduction to cluster computing
Molecular Dynamics - Building input files, visualising the trajectory
Workshop Delivery Mode Information
Workshop Delivery Mode Information
Workshops on Nectar Instances
Archive
Archive
Introduction to Unix-Archive
Introduction to CWL
Index
PR reviewers and advice: Ira Cooke
Current slides: TBD
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