RNA-seq analysis in R

We recommend this course produced by COMBINE:

• RNA-seq analysis in R

The tutorial introduces the analysis of RNA-seq count data using R. This includes reading the data into R, quality control and preprocessing, and performing differential expression analysis and gene set testing, with a focus on the limma-voom analysis workflow.

Additional RNA-seq analysis links

• Van Den Berge K. et al, 2018. RNA sequencing data: hitchhiker’s guide to expression analysis. PeerJ Preprints 6:e27283v2

• Love MI. et al, 2016. RNA-Seq workflow: gene-level exploratory analysis and differential expression. F1000Research, 4:1070