Building upon three existing NCRIS-funded capabilities, the Nectar Research Cloud, RDS data services and the Genomics Virtual Laboratory (GVL), RDS Omics empowers the modern biologist to go from raw data to complex, collaborative, downstream analyses without the need to purchase expensive compute or pay for scarce bioinformaticians. Modern biology is being revolutionised by high-throughput molecular […]
|Melbourne Bioinformatics||LEAD INSTITUTE|
|University of Melbourne||MEMBER INSTITUTE|
|University of Queensland||MEMBER INSTITUTE|
|Queensland Cyber Infrastructure Foundation (QCIF)||COLLABORATOR|
Bioplatforms Australia contract, with additional funding from Nectar, both funded by NCRIS
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Over ten years after the sequencing of the human genome, in 2013 the National eResearch Collaboration Tools and Resources project (Nectar) funded this project, led out of the University of Queensland by Ron Horst, with partners from the VLSCI (now Melbourne Bioinformatics), the Garvan Institute and CSIRO. With the exponential growth in genomic data being generated, the Australian-made GVL was built to make genomic data analysis more accessible to biologists. It has successfully achieved this goal and continues to serve the research community in many ways.
The Genomics Virtual Lab is a computational workbench providing a highly accessible cloud-based genomics analysis environment preconfigured with best practice genomics tools and supplemented with comprehensive tutorial materials and protocols, managed services and user support.
There are now large installations at Monash, Melbourne and Queensland universities, with more planned for Western Australia, New South Wales and Tasmania. Adopted both locally and overseas, the GVL has already been recognised as a quality platform to help address the shortage of bioinformatics expertise around the world and manage the complex, multiple-layered data analysis tasks confronting life scientists today.
The GVL works as both a research and training tool, with life scientists able to undertake self-directed training to then translate this knowledge to their own data. It is also being used to deliver content in the Masters of Science (Bioinformatics) at the University of Melbourne.
As part of the work being undertaken to extend the reach of the GVL, our experts have carried out performance analysis testing of GVL-based clusters on the Nectar cloud.
The GVL is now being tailored for the specific needs of researchers in microbiology. Read CLIMB story in microGVL project page. For a full explanation of what this means for UK public health and how our microGVL plays its part, read Prof Mark Pallen’s 27 July 2016 blog from the PHGfoundation.
Australian-made Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud, in PLOS ONE, 26 October 2015. Recognition of the value of the Australian-made Genomics Virtual Laboratory (GVL) was boosted further this week with its publication on 26 October in PLOS One. Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud outlines how a team of Australian […]