Ms Claudia Curcio
Office CoordinatorClaudia is currently on maternity leave; please contact Julie Schumann for all Melbourne Bioinformatics enquiries.
PHONE
+61 3 9035 5822MOBILE
EMAIL
claudia.curcio@nullunimelb.edu.au
Claudia is currently on maternity leave; please contact Julie Schumann for all Melbourne Bioinformatics enquiries.
Dr Rhys Francis
Strategic Advisor - Australian BioCommonsPHONE
MOBILE
+61 432 583 503EMAIL
rhys_francis@nullicloud.comWEB
Dr Rhys Francis's website
Mr Simon Gladman
Senior Research Fellow, Galaxy Australia LeadSadly, Simon has passed away. For any Galaxy Australia matters relating to Simon, please use their support form; for all other enquiries please contact Melbourne Bioinformatics.
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Mr Simon Gladman's website
Dr Christina Hall
Training and Communications Manager, Australian BioCommonsPHONE
+61 3 8344 3528MOBILE
+61 402 973 338EMAIL
christina@nullbiocommons.org.auWEB
Dr Christina Hall's website
Ms Jessica Holliday
Program Manager, Human Genomics Informatics InitiativePHONE
MOBILE
EMAIL
j.holliday@nullunimelb.edu.au
Dr Brett Holman
Communications OfficerPHONE
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EMAIL
bholman@nullunimelb.edu.auWEB
Dr Brett Holman's website
VIEW PROFILE
Prof Andrew Lonie
Director, Australian BioCommons & Senior Advisor, Melbourne BioinformaticsPHONE
+61 3 8344 1395MOBILE
EMAIL
alonie@nullunimelb.edu.auWEB
Prof Andrew Lonie's websiteEducation
- BSc(Hons) University of Adelaide 1990 [Biochemistry]
- PhD University of Adelaide 1994 [Molecular Genetics]
Teaching
Current Grants
NHMRC APP1047581
Hovens C, Corcoran N, Haviv I, Kowalczyk A, Lonie A, Macintyre G, Neal D, Costello T, Pedersen J
Role: CIE; $672,431 (2013-2015)
The origin of lethal metastatic prostate cancer
National eCollaboration and Tools and Resources – Virtual Laboratories Program
Lonie A
Role: CIA; $700,000 (2014-2015)
Data intensive collaboration on the Genomics Virtual Laboratory
Cancer Australia APP1047347
Southey MC, Goldgar DE, Park DJ, Lonie A, Winship I, Simpon P, Lakhani S.
Role: CIE; $300,000 (2013-2015)
High Risk Genes for Lobular Breast Cancer
Cancer Australia APP1066612
Park, D., Pope, B., Nguyen-Dumont, T., Waring, P., Taylor, G., Lonie, A.
Role: CIF; $300,000 (2014-16)
Mouse phenotype-driven breast cancer risk gene discovery
Publications
Top publications focussed on development and implementation of bioinformatics and computational biology methodologies and platforms.
- M Hong, G Macintyre, D Wedge, P Van Loo, S Lunke, L Alexandrov, C Sloggett, M Cmero, K Patel, F Marass, D Tsui, S Mangiola, A Lonie, H Naeem, N Sapre, P Phal, N Kurganovs, X Chin, M Kerger, N Rosenfeld, J Pedersen, A Ryan, I Haviv, A Costello, N Corcoran, C Hovens (2015). Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer. Nature Communications (accepted Jan 2015)
- A Patch, E Christie, D Etemadmoghadam, DW. Garsed, J George, S Fereday,…, A Lonie,…, and D Bowtell (2015). Whole–genome characterization of chemoresistant ovarian cancer. Nature, 2015; 521 (7553): 489
- D Park, K Tao, F Le Calvez-Kelm, T Nguyen-Dumont, N Robinot, F Hammet, F Odefrey, H Tsimiklis, Z Teo, L Thingholm, E Young, C Voegele, A Lonie, B Pope, T Roane, R Bell, H Hu, Shankaracharya, C Hu, J Ellis, J Li, I Makunin, E John, I Andrulis, M Terry, M Daly, S Buys, C Snyder, H Lynch, P Devilee, G Giles, J Hopper, B Feng, F Lesueur, S Tavtigian, M Southey and D Goldgar (2014). Rare mutations in RINT1 predispose carriers to breast and Lynch Syndrome-spectrum cancers. Cancer Discov. 2014 Jul;4(7):804-15.
- Campos TD, Young ND1, Korhonen PK, Hall RS, Mangiola S, Lonie A, Gasser RB (2014). Identification of G protein-coupled receptors in Schistosoma haematobium and S. mansoni by comparative genomics. Parasite Vectors. 2014 May 27;7:242. doi: 10.1186/1756-3305-7-242.
- Y Kuo, A Lonie, A Pearce and L Sonenberg (2014) “Mining Surprising Patterns and Their Explanations in Clinical Data”. Applied Artificial Intelligence 28(2),111-138
- G Severi, M Southey, D English, C Jung, A Lonie, C McLean, H Tsimiklis, J Hopper, G Giles, L Baglietto (2014). Epigenome-wide methylation in DNA from peripheral blood as a marker of risk for breast cancer. Breast Cancer Research and Treatment Vol 148, Issue 3, pp 665-673
- Pope, BJ, Nguyen-Dumont, T, Odefrey, F, Bell, R, Tavtigian, SV, Goldgar, DE, Lonie, A, Southey, MC, Park DJ. (2013). FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets. BMC Bioinformatics 2013, 14:65.
- Elyas, M; Maynard, SB; Ahmad, A; Lonie, A (2014). Towards a Systematic Framework for Digital Forensics Readiness. Journal of Computer Information Systems. 54(3):97-105.
- DJ Park, F Lesueur, T Nguyen-Dumont, M Pertesi, F Odefrey, F Hammet, SL Neuhausen, EM John, IL Andrulis, MB Terry, M Daly, S Buys, F Le Calvez-Kelm, A Lonie, BJ Pope, H Tsimiklis, C Voegele, FM Hilbers, N. Hoogerbrugge, A Barroso, A Osorio, BCFR, kConFab, GG Giles, P Devilee, J Benitez, JL Hopper, SV Tavtigian, DE Goldgar, MC Southey (2012). Rare mutations in XRCC2 confer increased risk of breast cancer. American Journal of Human Genetics. 90 (4): 734–739
- PJ Harris, S Manos, ME Hibbert, E Kazmierczak, A Lonie (2010). VPH Clinical Data Integration, Life Sciences Computational Research and Outreach at the University of Melbourne. Virtual Physiological Human Annual Conference 2010 Brussels, Belgium
- Miller H, Clarke S, Lane S, Lonie A, Lazaridis D, Petrovski S and Jones O. 2009. Predicting customer behaviour: The University of Melbourne’s KDD Cup report. Proceedings of the KDD Cup 2009 – Accepted for publication in Journal of Machine Learning Research: Workshop and Conference Proceedings Volume 7: Proceedings of KDD-Cup 2009 competition.Other publications, papers, reports …
- ZL Teo, DJ Park, F Odefrey, F Hammet, T Nguyen-Dumont, H Tsimiklis, BJ Pope, A Lonie, I Winship, GG Giles, ABCFS, JL Hopper and MC Southey. 2012. Expanded genetic analysis of a PALB2 c.3113G>A mutation carrying multiple-case breast cancer family via exome sequencing. (2012). Hereditary Cancer in Clinical Practice 2012, 10(Suppl 2):A92 doi:10.1186/1897-4287-10-S2-A92
- MC Southey, DJ Park, F Lesueur, F Odefrey, T Nguyen-Dumont, F Hammet, SL Neuhausen, EM John, IL Andrulis, G Chenevix-Trench, L Baglietto, F Le Calvez-Kelm, M Pertesi, A Lonie, B Pope, O Sinilnikova, H Tsimiklis, GG Giles, JL Hopper, SV Tavtigian and DE Goldgar, MCCS, BCFR, kConFab. Identification of new breast cancer predisposition genes via whole exome sequencing. (2012) Hered Cancer Clin Pract. 2012; 10(Suppl 2): A40. Published online 2012 April 12. doi: 10.1186/1897-4287-10-S2-A40
- Lonie, A (2012). In life sciences research today, resistance to computation is not an option. Australasian Biotechnology, Vol. 22, No. 3, Dec 2012: 14-15
- PJ Harris, S Manos, ME. Hibbert, E Kazmierczak, A Lonie. 2010. VPH Clinical Data Integration, Life Sciences Computational Research and Outreach at the University of Melbourne. Virtual Physiological Human Annual Conference 2010 Brussels, Belgium
- Tao Z, Lonie A & Nath G. 2009. A Data Clustering Approach To Discriminating Impersonating Devices In Wi-Fi Networks. Security Comm. Networks. 2010; 3:44–57
- Chu X., Lonie A., Harris P., Thomas S.R. & Buyya R (2008). “A Service-Oriented Grid Environment for Integration of Distributed Kidney Models and Resources” Concurrency and Computation: Practice and Experience 2008; 20(9): 1095-111
- Kuo Y, Lonie A., Paizis K. & Sonenberg E. “Domain Ontology Driven Data Mining – A Medical Case Study” Proceedings of the International Workshop on Domain Driven Data Mining 2007 pp.11-17
- Yen-Ting Kuo, Liz Sonenberg & Andrew Lonie. 2008. Finding Explanations for Assisting Pattern Interpretation. 2008 IEEE/WIC/ACM International Conference on Web Intelligence. 48-51. California, United States: IEEE Computer Society
- Tao Z, Nath G & Lonie A. 2008. An Optimal Sensor Architecture for Wi-Fi Intrusion Detection. International Journal of Computer Science and Network Security. 8 (2): 10-19.
- Tao Z, Nath G & Lonie A. 2008. X-Mode: A Real Time Approach of Discriminating Wi-Fi network Impersonators. Proceedings of the 4th International Conference on Next Generation Web Services Practices. 151-158. California, United States: IEEE Computer Society.
- Thomas R, Layton , Harris P, Lonie A, Moore . 2005. Towards a web resource for quantitative renal physiology. Journal of Physiology – London. 565P (0): 98.
- Cowan PJ, Shinkel, TA, Fisicaro, N, Godwin JH, Bernabéu C, Almendro N, Rius C, Lonie AJ, Nottle MB, Wigley PL, Paizis K, Pearse MJ, and d’Apice AJ. 2003 Targeting Gene Expression to Endothelium in Transgenic Animals: A Comparison of the Human ICAM-2, PECAM-1 and Endoglin Promoters. Xenotransplantation. May;10(3):223-31.
- Cowan PJ., Shinkel TA., Aminian A., Romanella M., Wigley PL., Lonie A., Nottle MB., Pearse MJ., d’Apice AJ. 1998. High-level co-expression of complement regulators on vascular endothelium in transgenic mice: CD55 and CD59 provide greater protection from human complement-mediated injury than CD59 alone. Xenotransplantation Aug;5(3):184-90
- Tearle RG, Tange MJ, Zannettino ZL, Katerelos M, Shinkel TA, Van Denderen BJ, Lonie A, Lyons I, Nottle MB, Cox T, Becker C, Peura AM, Wigley PL, Crawford RJ, Robins AJ, Pearse MJ, d’Apice AJ 1996 The alpha-1,3-galactosyltransferase knockout mouse. Implications for xenotransplantation. Transplantation Jan 15;61(1):13-9
- Lonie A, D’Andrea R, Paro R, Saint R 1994. Molecular characterisation of the Polycomblike gene of Drosophila melanogaster, a trans-acting negative regulator of homeotic gene expression. Development Sep;120(9):2629-36
A/Prof Daniel Park
Academic Lead, Melbourne BioinformaticsPHONE
+61 3 8344 9059MOBILE
EMAIL
djp@nullunimelb.edu.auWEB
A/Prof Daniel Park's website
Dr Vicky Perreau
Senior Research Fellow - Bioinformatics Training (Academic Specialist)PHONE
+61 3 9035 4945MOBILE
+61 4 0880 4386EMAIL
vperreau@nullunimelb.edu.au
Ms Lisa Phippard
Project Manager - PlatformsPHONE
+61 403 528 581MOBILE
+61 403 528 581EMAIL
lisa.phippard@nullunimelb.edu.auWEB
Ms Lisa Phippard's website
A/Prof Bernard Pope
Human Genomics Lead, Victorian Health and Medical Research FellowPHONE
+61 3 8344 0434MOBILE
EMAIL
bjpope@nullunimelb.edu.auWEB
A/Prof Bernard Pope's website